qsirecon.utils.misc module

Miscellaneous utility functions.

qsirecon.utils.misc.bids_response_function_to_mrtrix(json_file)

Convert a JSON response function to an MRtrix format.

qsirecon.utils.misc.check_deps(workflow)

qsirecon.utils.misc.deep_update_dict(base_dict, update_dict)

Recursively update a dictionary with another dictionary.

This function updates base_dict with values from update_dict, recursively merging nested dictionaries instead of replacing them.

Parameters:

• base_dict (dict) – The dictionary to be updated

• update_dict (dict) – The dictionary with updates

Returns:

The updated dictionary

Return type:

dict

qsirecon.utils.misc.listify(obj)

Wrap all non-list or tuple objects in a list.

This provides a simple way to accept flexible arguments.

qsirecon.utils.misc.load_yaml(fname)

qsirecon.utils.misc.mrtrix_response_function_to_bids(response_function_file)

Load a response function from MRtrix3 and convert to JSON-compatible format.

qsirecon.utils.misc.remove_non_alphanumeric(input_string: str) → str