qsirecon.workflows.recon.converters module
Converting between file formats
- qsirecon.workflows.recon.converters.init_mif_to_fibgz_wf(inputs_dict, name='mif_to_fibgz', qsirecon_suffix='', params={})[source]
Converts a MRTrix mif file to DSI Studio fib file.
This workflow uses
sh2ampto sample the FODs on the standard DSI Studio ODF direction set. These are then loaded and converted to the fib MATLAB v4 format and peak directions are detected using Dipy.Inputs
- mif_file
MRTrix format mif file containing sh coefficients representing FODs.
Outputs
- fibgz
DSI Studio fib file containing the FODs from the input
mif_file.
- qsirecon.workflows.recon.converters.init_fibgz_to_mif_wf(name='fibgz_to_mif', qsirecon_suffix='', params={})[source]
Needs Documentation
- qsirecon.workflows.recon.converters.init_fod_fib_wf(inputs_dict, name='fod_fib', qsirecon_suffix='', params={})[source]
Converts MRTrix FODs to a DSI Studio fib file for the FOD-AutoTrack method.
Inputs
- fod_sh_mif
MRTrix format mif file containing sh coefficients representing FODs.
- fibgz
DSI Studio file containing a standard GQI reconstruction
- fibgz_map
DSI Studio spatial normalization file.
Outputs
- fibgz
DSI Studio fib file containing the FODs from the input
mif_file.- fibgz_map
DSI Studio spatial normalization file. Passed through unchanged, but renamed to match
fibgzso it will be recognized by DSI Studio.- recon_scalars
Ununsed.
- qsirecon.workflows.recon.converters.init_mif_to_fibgz_wf(inputs_dict, name='mif_to_fibgz', qsirecon_suffix='', params={})[source]
Converts a MRTrix mif file to DSI Studio fib file.
This workflow uses
sh2ampto sample the FODs on the standard DSI Studio ODF direction set. These are then loaded and converted to the fib MATLAB v4 format and peak directions are detected using Dipy.Inputs
- mif_file
MRTrix format mif file containing sh coefficients representing FODs.
Outputs
- fibgz
DSI Studio fib file containing the FODs from the input
mif_file.