qsirecon.interfaces.ingress module

Interfaces for handling BIDS-like neuroimaging structures

Fetch some example data:

>>> import os
>>> from niworkflows import data
>>> data_root = data.get_bids_examples(variant='BIDS-examples-1-enh-ds054')
>>> os.chdir(data_root)

Disable warnings:

>>> from nipype import logging
>>> logging.getLogger('nipype.interface').setLevel('ERROR')
class qsirecon.interfaces.ingress.QSIPrepDWIIngress(from_file=None, resource_monitor=None, **inputs)[source]

Bases: SimpleInterface

Optional Inputs:

  • atlas_names (a list of items which are any value)

  • b_file (a pathlike object or string representing an existing file)

  • bval_file (a pathlike object or string representing an existing file)

  • bvec_file (a pathlike object or string representing an existing file)

  • dwi_file (a pathlike object or string representing an existing file)

Outputs:

  • acq_id (a string)

  • b_file (a pathlike object or string representing an existing file)

  • btable_file (a pathlike object or string representing an existing file)

  • bval_file (a pathlike object or string representing an existing file)

  • bvec_file (a pathlike object or string representing an existing file)

  • confounds_file (a pathlike object or string representing an existing file)

  • dir_id (a string)

  • dwi_file (a pathlike object or string representing an existing file)

  • dwi_ref (a pathlike object or string representing an existing file)

  • local_bvec_file (a pathlike object or string representing a file)

  • mask_file (a pathlike object or string representing a file)

  • qc_file (a pathlike object or string representing an existing file)

  • rec_id (a string)

  • run_id (a string)

  • session_id (a string)

  • slice_qc_file (a pathlike object or string representing an existing file)

  • space_id (a string)

  • subject_id (a string)