qsirecon.interfaces.interchange module

class qsirecon.interfaces.interchange.ReconAnatomicalData(from_file=None, resource_monitor=None, **inputs)

Bases: SimpleInterface

Optional Inputs:

• acpc_aparc (any value)

• acpc_aseg (any value)

• acpc_brain_mask (any value)

• acpc_csf_probseg (any value)

• acpc_gm_probseg (any value)

• acpc_preproc (any value)

• acpc_seg (any value)

• acpc_to_template_xfm (any value)

• acpc_wm_probseg (any value)

• aseg (any value)

• brain (any value)

• fs_5tt_hsvs (any value)

• fs_to_qsiprep_transform_itk (any value)

• fs_to_qsiprep_transform_mrtrix (any value)

• orig_to_acpc_xfm (any value)

• qsiprep_5tt_fast (any value)

• qsiprep_5tt_hsvs (any value)

• template_to_acpc_xfm (any value)

Outputs:

• acpc_aparc (any value)

• acpc_aseg (any value)

• acpc_brain_mask (any value)

• acpc_csf_probseg (any value)

• acpc_gm_probseg (any value)

• acpc_preproc (any value)

• acpc_seg (any value)

• acpc_to_template_xfm (any value)

• acpc_wm_probseg (any value)

• aseg (any value)

• brain (any value)

• fs_5tt_hsvs (any value)

• fs_to_qsiprep_transform_itk (any value)

• fs_to_qsiprep_transform_mrtrix (any value)

• orig_to_acpc_xfm (any value)

• qsiprep_5tt_fast (any value)

• qsiprep_5tt_hsvs (any value)

• template_to_acpc_xfm (any value)

class qsirecon.interfaces.interchange.ReconWorkflowInputs(from_file=None, resource_monitor=None, **inputs)

Bases: SimpleInterface

Optional Inputs:

• acpc_aparc (any value)

• acpc_aseg (any value)

• acpc_brain_mask (any value)

• acpc_csf_probseg (any value)

• acpc_gm_probseg (any value)

• acpc_preproc (any value)

• acpc_seg (any value)

• acpc_to_template_xfm (any value)

• acpc_wm_probseg (any value)

• acq_id (any value)

• aseg (any value)

• atlas_configs (any value)

• b_file (any value)

• brain (any value)

• btable_file (any value)

• bval_file (any value)

• bvec_file (any value)

• confounds_file (any value)

• dir_id (any value)

• dwi_file (any value)

• dwi_mask (any value)

• dwi_ref (any value)

• fs_5tt_hsvs (any value)

• fs_to_qsiprep_transform_itk (any value)

• fs_to_qsiprep_transform_mrtrix (any value)

• local_bvec_file (any value)

• mapping_metadata (any value)

• mask_file (any value)

• odf_rois (any value)

• orig_to_acpc_xfm (any value)

• qc_file (any value)

• qsiprep_5tt_fast (any value)

• qsiprep_5tt_hsvs (any value)

• rec_id (any value)

• resampling_template (any value)

• run_id (any value)

• session_id (any value)

• slice_qc_file (any value)

• space_id (any value)

• subject_id (any value)

• template_to_acpc_xfm (any value)

Outputs:

• acpc_aparc (any value)

• acpc_aseg (any value)

• acpc_brain_mask (any value)

• acpc_csf_probseg (any value)

• acpc_gm_probseg (any value)

• acpc_preproc (any value)

• acpc_seg (any value)

• acpc_to_template_xfm (any value)

• acpc_wm_probseg (any value)

• acq_id (any value)

• aseg (any value)

• atlas_configs (any value)

• b_file (any value)

• brain (any value)

• btable_file (any value)

• bval_file (any value)

• bvec_file (any value)

• confounds_file (any value)

• dir_id (any value)

• dwi_file (any value)

• dwi_mask (any value)

• dwi_ref (any value)

• fs_5tt_hsvs (any value)

• fs_to_qsiprep_transform_itk (any value)

• fs_to_qsiprep_transform_mrtrix (any value)

• local_bvec_file (any value)

• mapping_metadata (any value)

• mask_file (any value)

• odf_rois (any value)

• orig_to_acpc_xfm (any value)

• qc_file (any value)

• qsiprep_5tt_fast (any value)

• qsiprep_5tt_hsvs (any value)

• rec_id (any value)

• resampling_template (any value)

• run_id (any value)

• session_id (any value)

• slice_qc_file (any value)

• space_id (any value)

• subject_id (any value)

• template_to_acpc_xfm (any value)