qsirecon.interfaces.pyafq module

Interface for running a PyAFQ workflow

class qsirecon.interfaces.pyafq.PyAFQRecon(from_file=None, resource_monitor=None, **inputs)

Bases: SimpleInterface

Mandatory Inputs:

• bval_file (a pathlike object or string representing an existing file)

• bvec_file (a pathlike object or string representing an existing file)

• dwi_file (a pathlike object or string representing an existing file)

• itk_file (a pathlike object or string representing an existing file)

• kwargs (a dictionary with keys which are any value and with values which are any value)

• mask_file (a pathlike object or string representing an existing file)

Optional Inputs:

• n_procs (an integer) – (Nipype default value: 1)

• tck_file (a pathlike object or string representing an existing file or None)

Outputs:

afq_dir (a string or os.PathLike object)